Publications

Peer-reviewed work from the Open Connectome Project team covering connectomics, big-data neuroscience, and scalable brain imaging infrastructure.

Research Output

Selected Publications

  • J. T. Vogelstein, E. Perlman, B. Falk, A. Baden, W. Gray Roncal, V. Chandrashekhar, F. Collman, S. Seshamani, J. L. Patsolic, K. Lillaney, M. Kazhdan, R. Hider, D. Pryor, J. Matelsky, T. Gion, P. Manavalan, B. Wester, M. Chevillet, E. T. Trautman, K. Khairy, E. Bridgeford, D. M. Kleissas, D. J. Tward, A. K. Crow, B. Hsueh, M. A. Wright, M. I. Miller, S. J. Smith, R. J. Vogelstein, K. Deisseroth, and R. Burns. A Community-Developed Open-Source Computational Ecosystem for Big Neuro Data. Nature Methods, (11)15:846–847, 2018.

    Nature Methods · 2018
  • D. Kleissas, R. Hider, D. Pryor, T. Gion, P. Manavalan, J. Matelsky, A. Baden, K. Lillaney, R. Burns, D. D'Angelo, W. Gray Roncal, and B. Wester. The Block Object Storage Service (bossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery. bioRxiv, 2017.

    bioRxiv · 2017
  • J. T. Vogelstein, B. Mensh, M. Häusser, N. Spruston, A. C. Evans, K. Kording, K. Amunts, C. Ebell, J. Muller, M. Telefont, S. Hill, S. P. Koushika, C. Calì, P. A. Valdés-Sosa, P. B. Littlewood, C. Koch, S. Saalfeld, A. Kepecs, H. Peng, Y. O. Halchenko, G. Kiar, M. M. Poo, J. B. Poline, M. P. Milham, A. Schaffer, R. Gidron, H. Okano, V. D. Calhoun, M. Chun, D. M. Kleissas, R. J. Vogelstein, E. Perlman, R. Burns, R. Huganir, and M. I. Miller. To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery. Neuron, (3)92:622–627, 2016.

    Neuron · 2016
  • R. Burns, J. T. Vogelstein, and A. S. Szalay. From cosmos to connectomes: The evolution of data-intensive science. Neuron, (6)83:1249–1252, 2014.

    Neuron · 2014
  • R. Burns, W. G. Roncal, D. Kleissas, K. Lillaney, P. Manavalan, E. Perlman, D. R. Berger, D. D. Bock, K. Chung, L. Grosenick, N. Kasthuri, N. C. Weiler, K. Deisseroth, M. Kazhdan, J. Lichtman, R. C. Reid, S. J. Smith, A. S. Szalay, J. T. Vogelstein, and R. J. Vogelstein. The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience. ACM International Conference on Scientific and Statistical Database Management (SSDBM), 2013.

    ACM SSDBM · 2013
Documents

Recent Research Documents

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Specificity and randomness: structure–function relationships in neural circuits

Sep 2019
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On the estimation of population-specific synaptic currents from laminar multielectrode recordings

Sep 2019
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Challenges of microtome-based serial block-face scanning electron microscopy in neuroscience

Sep 2019
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Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography

Sep 2019
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Comparative ultrastructural features of excitatory synapses in the visual and frontal cortices of the adult mouse and monkey

Sep 2019
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EM connectomics reveals axonal target variation in a sequence-generating network

Sep 2019